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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Posts
Future Blog Post
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Blog Post number 4
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Blog Post number 1
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projects
Neural networks for accelerating numerics
Numerical methods are often limited by a CFL condition that limits the ability to take long timesteps. In collaboration with scientists at GFDL, we are investigating ways of using neural networks to predict ‘unroll’ a timeloop for a finite volume model and predict fluxes over multiple timesteps at once. In this way, we are mimicking a multi-dimensional, high CFL algorithm while still maintaining properties of conservation. The following image shows preliminary results using MOM6
Online, neural network inference for sub grid-scale physics
Neural networks trained on high-resolution data can ‘learn’ the relationships between the mean flow state variables and the turbulent terms. With scientists at NCAR and M2Lines, we have demonstrated the first implementations of using these neural networks online in climate-scale, ocean simulations. The image below is from a simulation performed on Frontier which we subseqently scaled to ~20,000 CPUs and ~5,000 AMD GPUs.
AI techniques applied to computational fluid dynamics
OpenFOAM, a widely-used, open-source CFD solver, has a wide user base. With the Data-driven Modeling Special Interest group, we explored a variety of cases where we could inject AI (and related) techniques to classic CFD problems. To give others in the community a starting point, we developed three cases: 1) training a CNN online and then using it to predict the motion of the mesh in the case of a moving airfoil (see the image below, red indicates that the neural network results in better mesh quality than the default algorithm) 2) implementing an online, distributed, PCA algorithm to calculate turbulent eigenmodes for a turbulent cylinder in a box 3) using Bayesian optimization to tune turbulence parameters for the Pitz and Daily combustion case.
publications
Mixed layer saturations of CFC-11, CFC-12, and SF6 in a global isopycnal model
Published in Journal of Geophysical Research: Oceans, 2013
Shao, Andrew E; Mecking, Sabine; Thompson, LuAnne; Sonnerup, Rolf E. "Mixed layer saturations of CFC-11, CFC-12, and SF6 in a global isopycnal model". Journal of Geophysical Research: Oceans, 2013.
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Properties of the Subantarctic Front and Polar Front from the skewness of sea level anomaly
Published in J. Geophys. Res. Oceans, 2015
Shao, Andrew E.; Gille, Sarah T.; Mecking, Sabine; Thompson, LuAnne. "Properties of the Subantarctic Front and Polar Front from the skewness of sea level anomaly". J. Geophys. Res. Oceans, 2015.
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Evaluating the use of 1‐D transit time distributions to infer the mean state and variability of oceanic ventilation
Published in JGR Oceans, 2016
Shao, Andrew E.; Mecking, Sabine; Thompson, LuAnne; Sonnerup, Rolf E.. "Evaluating the use of 1‐D transit time distributions to infer the mean state and variability of oceanic ventilation". JGR Oceans, 2016.
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The GFDL Global Ocean and Sea Ice Model OM4.0: Model Description and Simulation Features
Published in J Adv Model Earth Syst, 2019
Adcroft, Alistair; Anderson, Whit; Balaji, V.; Blanton, Chris; Bushuk, Mitchell; Dufour, Carolina O.; Dunne, John P.; Griffies, Stephen M.; Hallberg, Robert; Harrison, Matthew J.; Held, Isaac M.; Jansen, Malte F.; John, Jasmin G.; Krasting, John P.; Langenhorst, Amy R.; Legg, Sonya; Liang, Zhi; McHugh, Colleen; Radhakrishnan, Aparna; Reichl, Brandon G.; Rosati, Tony; Samuels, Bonita L.; Shao, Andrew; Stouffer, Ronald; Winton, Michael; Wittenberg, Andrew T.; Xiang, Baoqiang; Zadeh, Niki; Zhang, Rong. "The GFDL Global Ocean and Sea Ice Model OM4.0: Model Description and Simulation Features". J Adv Model Earth Syst, 2019.
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Modeled Impacts of Sea Ice Exchange Processes on Arctic Ocean Carbon Uptake and Acidification (1980–2015)
Published in JGR Oceans, 2020
Mortenson, Eric; Steiner, Nadja; Monahan, Adam H.; Hayashida, Hakase; Sou, Tessa; Shao, Andrew. "Modeled Impacts of Sea Ice Exchange Processes on Arctic Ocean Carbon Uptake and Acidification (1980–2015)". JGR Oceans, 2020.
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A General‐Coordinate, Nonlocal Neutral Diffusion Operator
Published in J Adv Model Earth Syst, 2020
Shao, Andrew E.; Adcroft, Alistair; Hallberg, Robert; Griffies, Stephen M.. "A General‐Coordinate, Nonlocal Neutral Diffusion Operator". J Adv Model Earth Syst, 2020.
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Ocean biogeochemistry in the Canadian Earth System Model version 5.0.3: CanESM5 and CanESM5-CanOE
Published in Geosci. Model Dev., 2021
Christian, James R.; Denman, Kenneth L.; Hayashida, Hakase; Holdsworth, Amber M.; Lee, Warren G.; Riche, Olivier G. J.; Shao, Andrew E.; Steiner, Nadja; Swart, Neil C.. "Ocean biogeochemistry in the Canadian Earth System Model version 5.0.3: CanESM5 and CanESM5-CanOE". Geosci. Model Dev., 2021.
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What causes the spread of model projections of ocean dynamic sea-level change in response to greenhouse gas forcing?
Published in Clim Dyn, 2021
Couldrey, Matthew P.; Gregory, Jonathan M.; Boeira Dias, Fabio; Dobrohotoff, Peter; Domingues, Catia M.; Garuba, Oluwayemi; Griffies, Stephen M.; Haak, Helmuth; Hu, Aixue; Ishii, Masayoshi; Jungclaus, Johann; Köhl, Armin; Marsland, Simon J.; Ojha, Sayantani; Saenko, Oleg A.; Savita, Abhishek; Shao, Andrew; Stammer, Detlef; Suzuki, Tatsuo; Todd, Alexander; Zanna, Laure. "What causes the spread of model projections of ocean dynamic sea-level change in response to greenhouse gas forcing?". Clim Dyn, 2021.
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Understanding AMOC stability: the North Atlantic Hosing Model Intercomparison Project
Published in Geosci. Model Dev., 2022
Jackson, Laura C.; Alastrué de Asenjo, Eduardo; Bellomo, Katinka; Danabasoglu, Gokhan; Haak, Helmuth; Hu, Aixue; Jungclaus, Johann; Lee, Warren; Meccia, Virna L.; Saenko, Oleg; Shao, Andrew; Swingedouw, Didier. "Understanding AMOC stability: the North Atlantic Hosing Model Intercomparison Project". Geosci. Model Dev., 2022.
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Anthropogenic Carbon Increase has Caused Critical Shifts in Aragonite Saturation Across a Sensitive Coastal System
Published in Global Biogeochemical Cycles, 2022
Jarníková, Tereza; Ianson, Debby; Allen, Susan E.; Shao, Andrew E.; Olson, Elise M.. "Anthropogenic Carbon Increase has Caused Critical Shifts in Aragonite Saturation Across a Sensitive Coastal System". Global Biogeochemical Cycles, 2022.
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Using Machine Learning at scale in numerical simulations with SmartSim: An application to ocean climate modeling
Published in Journal of Computational Science, 2022
Partee, Sam; Ellis, Matthew; Rigazzi, Alessandro; Shao, Andrew E.; Bachman, Scott; Marques, Gustavo; Robbins, Benjamin. "Using Machine Learning at scale in numerical simulations with SmartSim: An application to ocean climate modeling". Journal of Computational Science, 2022.
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The Role of Atlantic Basin Geometry in Meridional Overturning Circulation
Published in Journal of Physical Oceanography, 2022
Ragen, Sarah; Armour, Kyle C.; Thompson, LuAnne; Shao, Andrew; Darr, David. "The Role of Atlantic Basin Geometry in Meridional Overturning Circulation". Journal of Physical Oceanography, 2022.
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Representing Eddy Diffusion in the Surface Boundary Layer of Ocean Models With General Vertical Coordinates
Published in J Adv Model Earth Syst, 2023
Marques, Gustavo M.; Shao, Andrew E.; Bachman, Scott D.; Danabasoglu, Gokhan; Bryan, Frank O.. "Representing Eddy Diffusion in the Surface Boundary Layer of Ocean Models With General Vertical Coordinates". J Adv Model Earth Syst, 2023.
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Improvements in the Canadian Earth System Model (CanESM) through systematic model analysis: CanESM5.0 and CanESM5.1
Published in Geosci. Model Dev., 2023
Sigmond, Michael; Anstey, James; Arora, Vivek; Digby, Ruth; Gillett, Nathan; Kharin, Viatcheslav; Merryfield, William; Reader, Catherine; Scinocca, John; Swart, Neil; Virgin, John; Abraham, Carsten; Cole, Jason; Lambert, Nicolas; Lee, Woo-Sung; Liang, Yongxiao; Malinina, Elizaveta; Rieger, Landon; von Salzen, Knut; Seiler, Christian; Seinen, Clint; Shao, Andrew; Sospedra-Alfonso, Reinel; Wang, Libo; Yang, Duo. "Improvements in the Canadian Earth System Model (CanESM) through systematic model analysis: CanESM5.0 and CanESM5.1". Geosci. Model Dev., 2023.
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Clustering to characterize extreme marine conditions for the benthic region of the Northeastern Pacific continental margin
Published in Authorea Preprints, 2024
Holdsworth, Amber M; Shao, Andrew; Christian, James R. "Clustering to characterize extreme marine conditions for the benthic region of the Northeastern Pacific continental margin". Authorea Preprints, 2024.
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A Scale‐Dependent Analysis of the Barotropic Vorticity Budget in a Global Ocean Simulation
Published in J Adv Model Earth Syst, 2024
Khatri, Hemant; Griffies, Stephen M.; Storer, Benjamin A.; Buzzicotti, Michele; Aluie, Hussein; Sonnewald, Maike; Dussin, Raphael; Shao, Andrew. "A Scale‐Dependent Analysis of the Barotropic Vorticity Budget in a Global Ocean Simulation". J Adv Model Earth Syst, 2024.
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Combining machine learning with computational fluid dynamics using OpenFOAM and SmartSim
Published in Meccanica, 2024
Maric, Tomislav; Fadeli, Mohammed Elwardi; Rigazzi, Alessandro; Shao, Andrew; Weiner, Andre. "Combining machine learning with computational fluid dynamics using OpenFOAM and SmartSim". Meccanica, 2024.
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talks
Combining scientific simulations and AI with SmartSim
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Abstract
Using AI for the greater good by advancing science
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Abstract
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.